Yes, and so is a virtual machine. I’m thinking install Linux to disk so that it can then run directly on hardware.

Yes, this is something that should be taken into account when designing this software.
Set dual-boot as a default / design UI in a way that offers dual-boot as a preferred option.
And many other technical issues will probably appear that will have to be figured out.
But I think that at least even thinking about this is a good start.
Also, this reminds me of 2013, when people accidentally nuked their Windows installs with Linux because they wanted to get the Tux in Team Fortress 2 (Valve gave it to people who played Linux version of TF2).